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Is there a software that can collate information from different sources (MSWord, PDF, Twitter, online newspapers etc) as I research a topic and then make it available together with each source for use when I start writing my research presentation?

Its difficult to provide one standard answer. The research topic depends on a) Your subject - physics, biology etc, b) Your knowledge level and experience- high school, under graduate, graduate, doctoral studies, c) Available resources (guide, faculty, laboratory, library) and d) Available time.

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For example, many scientists are busy with other types of research that may prevent an initial focus on a single topic. I have a particular interest in optics. You may choose to study optical systems by studying optical microscopy, laser spectroscopy or spectrum spectroscopy, the latter of which is my area of focus. Your course of study is not determined by your area of interest. A graduate student may choose to do a thesis or a research assistant position. I did a dissertation on optical components with a professor from the National Research Council. He suggested my course of concentration. In many cases, a faculty member will suggest a different course of study if they feel you can master a number of disciplines. For example, a professor from the Department of Chemistry might suggest that you try Chemistry 101, instead of, say, organic chemistry. You might think that's a.